Following graduation from Princeton in 2003, Hegseth joined Bear Stearns as an equity capital markets analyst and was also commissioned as an Infantry officer in the U.S. Army National Guard. In 2004 his unit was called to Guantánamo Bay, where he served as an Infantry Platoon Leader with the Minnesota Army National Guard. His unit was under the operational control of the 3rd Battalion, 187th Infantry Regiment 101st Airborne Division. He was awarded the Army Commendation Medal. Shortly after returning from Cuba, Hegseth volunteered to serve in Baghdad and Samarra, where he held the position of Infantry Platoon Leader and, later in Samarra, as Civil–Military Operations Officer. During his time in Iraq, he was awarded the Bronze Star Medal, Combat Infantryman Badge, and a second Army Commendation Medal.
He returned to Active Duty in 2012 as a Captain. He deployed to Afghanistan with the Minnesota Army National Guard and acted as a senior counterinsurgency instructor at the Counterinsurgency Training Center in Kabul.
Hegseth has been awarded two Bronze Stars for his service overseas. Hegseth, a Major, is assigned to the Army's Individual Ready Reserve.